RNAapt3D

Detail of monad0059

Aptamer Detail

monad ID: monad0059

Length: 34

Target Molecule: HIV-1 Tat protein (Q76PP9)

Sequence: GGGAGCUUGAUCCCGGAAACGGUCGAUCGCUCCC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad0059-1

Parameter: CentroidFold: McCaskill(BL) 2^2

Structure String: ((((((..(((((((....)))..))))))))))

Flip Position: ---------------****--------*------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0059-2

Parameter: CentroidFold: McCaskill(BL) 2^-3

Structure String: .(((((......(((....)))......))))).

Flip Position: *-------*------****---------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0059-3

Parameter: CentroidFold: McCaskill(BL) 2^-5

Structure String: .((((........((....))........)))).

Flip Position: *------**-*----****--*------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0059-4

Parameter: CentroidFold: McCaskill(Turner) 2^-4

Structure String: ((((((......(((....)))......))))))

Flip Position: -------***-----****-----**--------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0059-5

Parameter: CentroidFold: CONTRAfold 2^-1

Structure String: ((((((...((((((....)))..))).))))))

Flip Position: ---------------****--------*------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0059-6

Parameter: CentroidFold: CONTRAfold 2^-3

Structure String: ((((((......................))))))

Flip Position: ------**********************------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure