RNAapt3D

Detail of monad1012

Aptamer Detail

monad ID: monad1012

Length: 35

Target Molecule: Cyanocobalamin

Sequence: CCGGUGCGCAUAACCACCUCAGUGCGAGCAAGGAA

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad1012-1

Parameter: CentroidFold: CONTRAFold 2^1

Structure String: ......(((((..........))))).........

Flip Position: ******--*************-----*********

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1012-2

Parameter: CentroidFold: CONTRAFold 2^5

Structure String: ((.((.(((((..........))))).))..))..

Flip Position: ------------*********------------**

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1012-3

Parameter: CentroidFold: CONTRAFold 2^6

Structure String: ((.((.(((((.(.....)..))))).))..))..

Flip Position: -------------******--------------**

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1012-4

Parameter: CentroidFold: McCaskill BL 2^1

Structure String: .(((((........)))).............)...

Flip Position: **----********----*****************

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1012-5

Parameter: CentroidFold: McCaskill BL 2^2

Structure String: ((((((........))))...((....))..))..

Flip Position: **-----*-***--------*---***--******

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1012-6

Parameter: CentroidFold: McCaskill BL 2^4

Structure String: ((((((........))))(..((....)).)))..

Flip Position: **----********---------***-----****

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure