RNAapt3D

Detail of monad0063

Aptamer Detail

monad ID: monad0063

Length: 34

Target Molecule: GTP

Sequence: GGCAGCCACAAGAGCACGUAUACGCAAGGCUGUC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad0063-1

Parameter: CentroidFold: McCaskill(BL) 2^3

Structure String: ((((((.((........))...(....)))))))

Flip Position: ----------*****--------****-------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0063-2

Parameter: CentroidFold: McCaskill(BL) 2^4

Structure String: ((((((.((..(....)))...(....)))))))

Flip Position: ---------********------****-------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0063-3

Parameter: CentroidFold: McCaskill(Turner) 2^2

Structure String: (((((((......((........))..)))))))

Flip Position: -----********---******-*-****-----

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0063-4

Parameter: CentroidFold: CONTRAfold 2^3

Structure String: (((((((......(..((....)))..)))))))

Flip Position: -----********------***---**-------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure