RNAapt3D

Detail of monad1019

Aptamer Detail

monad ID: monad1019

Length: 40

Target Molecule: L-Histidine

Sequence: GGCAUCGGAAAGUGGGUUGAUGUAAGUAACAGGCGAUGCC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad1019-1

Parameter: CentroidFold: CONTRAFold 2^4

Structure String: (((((((....((....((.......))))...)))))))

Flip Position: -----***--***--*--****-**-*********-----

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1019-2

Parameter: CentroidFold: CONTRAFold 2^5

Structure String: (((((((....((....((.(....)))))...)))))))

Flip Position: ------****************************------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1019-3

Parameter: CentroidFold: McCaskill BL 2^2

Structure String: (((((((..............((.....))...)))))))

Flip Position: **-**********************************--*

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1019-4

Parameter: CentroidFold: McCaskill BL 2^5

Structure String: (((((((..((.....))..(((.....)))..)))))))

Flip Position: -------*-*--****--***---**-----**-------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1019-5

Parameter: CentroidFold: McCaskill Turner 2^0

Structure String: (((((((....((...............))...)))))))

Flip Position: -----******--***********-****-******----

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1019-6

Parameter: CentroidFold: McCaskill Turner 2^1

Structure String: (((((((....((...((.....))...))...)))))))

Flip Position: *------------------***------------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1019-7

Parameter: CentroidFold: McCaskill Turner 2^2

Structure String: (((((((....((.(.(((...))).).))...)))))))

Flip Position: -----------------*******----------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure