RNAapt3D

Detail of monad1017

Aptamer Detail

monad ID: monad1017

Length: 38

Target Molecule: Theophylline

Sequence: AGUGAUACCAGCAUCGUCUUGAUGCCCUUGGCAGCACU

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad1017-1

Parameter: CentroidFold: CONTRAFold 2^1

Structure String: .(((...((.(((((.....)))))....))...))).

Flip Position: *-**----------*******------**---****-*

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1017-2

Parameter: CentroidFold: CONTRAFold 2^2

Structure String: ((((...((((((((.....)))))...)))...))))

Flip Position: *-********----******-----*************

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1017-3

Parameter: CentroidFold: CONTRAFold 2^5

Structure String: ((((.(.(((((((((...))))))...))).).))))

Flip Position: ---------------*****----*******-------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1017-4

Parameter: CentroidFold: McCaskill BL 2^-2

Structure String: .(((.......(((.......)))..........))).

Flip Position: ----*--***----*******---**********---*

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure