RNAapt3D

Detail of monad0067

Aptamer Detail

monad ID: monad0067

Length: 33

Target Molecule: Ribosomal protein S8 (P62241)

Sequence: ACAGCACUGAUUGCGGUCGAGGUAGCUUGAUGG

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad0067-1

Parameter: CentroidFold: McCaskill(BL) 2^2

Structure String: .(.(((.....))).((((((....))))))).

Flip Position: *-----****-----------****------**

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0067-2

Parameter: CentroidFold: McCaskill(Turner) 2^2

Structure String: ...(((.....))).((((((....))))))..

Flip Position: ------****------------***-----***

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0067-3

Parameter: CentroidFold: McCaskill(Turner) 2^4

Structure String: .(.(((.....))))((((((....))))))..

Flip Position: ------****----------*****--------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0067-4

Parameter: CentroidFold: CONTRAfold 2^2

Structure String: ...............((((((....))))))..

Flip Position: **************--------***------**

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0067-5

Parameter: CentroidFold: CONTRAfold 2^3

Structure String: ...((.......)).((((((....))))))..

Flip Position: ***----***----*---*---***------**

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure