RNAapt3D

Detail of monad0066

Aptamer Detail

monad ID: monad0066

Length: 38

Target Molecule: Ribosomal protein S8 (P62241)

Sequence: GGGAUGCUCAGUGAUCCUUCGGGAUAUCAGGGCAUCCC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad0066-1

Parameter: CentroidFold: McCaskill(BL) 2^2

Structure String: (((((((((....((((....))))....)))))))))

Flip Position: -----------------****-----------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0066-2

Parameter: CentroidFold: McCaskill(BL) 2^3

Structure String: (((((((((...(((((....))))..).)))))))))

Flip Position: ------------------*****---------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0066-3

Parameter: CentroidFold: McCaskill(BL) 2^4

Structure String: (((((((((..((((((....))))..)))))))))))

Flip Position: ---------*-----********---------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0066-4

Parameter: CentroidFold: McCaskill(Turner) 2^4

Structure String: (((((((((.(..((((....))))..).)))))))))

Flip Position: ------------------***-----------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0066-5

Parameter: CentroidFold: McCaskill(Turner) 2^6

Structure String: (((((((((.((.((((....))))).).)))))))))

Flip Position: ----------------******----*-*---------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0066-6

Parameter: CentroidFold: McCaskill(BL) 2^0

Structure String: (((((((((.....(((....))).....)))))))))

Flip Position: ----------*----******----****---------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0066-7

Parameter: CentroidFold: McCaskill(BL) 2^-1

Structure String: (((((((((......((....))......)))))))))

Flip Position: --------*****----**-*-----****--------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0066-8

Parameter: CentroidFold: McCaskill(BL) 2^-3

Structure String: .((((((((......((....))......)))))))).

Flip Position: ------------*----*--------------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0066-9

Parameter: CentroidFold: McCaskill(Turner) 2^-3

Structure String: (((((((((....((((....))))....)))))))))

Flip Position: -------***--*---******---**--*--------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure