RNAapt3D

Detail of monad0056

Aptamer Detail

monad ID: monad0056

Length: 35

Target Molecule: HIV-1 Rev peptide

Sequence: GGCUGGACUCGUACUUCGGUACUGGAGAAACAGCC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad0056-1

Parameter: CentroidFold: McCaskill(BL) 2^2

Structure String: (((((..(((((((....))))..)))...)))))

Flip Position: -------------******----*-----------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0056-2

Parameter: CentroidFold: McCaskill(BL) 2^-3

Structure String: .((((..((.((((....))))...))...)))).

Flip Position: *------------******----**----------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0056-3

Parameter: CentroidFold: McCaskill(BL) 2^-4

Structure String: .((((.....((((....))))........)))).

Flip Position: *------------******-------***-----*

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0056-4

Parameter: CentroidFold: McCaskill(Turner) 2^-5

Structure String: (((((.....((((....))))........)))))

Flip Position: -----****-----***-----******-------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0056-5

Parameter: CentroidFold: CONTRAfold 2^-2

Structure String: (((((......((......)).........)))))

Flip Position: ----------*--*****--------****-----

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure