RNAapt3D

Detail of monad1025

Aptamer Detail

monad ID: monad1025

Length: 39

Target Molecule: EGFR - Extracellular Domain (P00533)

Sequence: GCCUUAGUAACGUGCUUUGAUGUCGAUUCGACAGGAGGC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad1025-1

Parameter: CentroidFold: CONTRAFold 2^3

Structure String: ((((.............(..(((((...))))).)))))

Flip Position: --***********************************--

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1025-2

Parameter: CentroidFold: CONTRAFold 2^5

Structure String: ((((((((.....))).(..(((((...)))))))))))

Flip Position: ----***************--**************----

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1025-3

Parameter: CentroidFold: McCaskill BL 2^0

Structure String: (((((.(.......)......((((...))))..)))))

Flip Position: --------**-***-****----*******---------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1025-4

Parameter: CentroidFold: McCaskill Turner 2^1

Structure String: .............(((((..(((((...))))).)))))

Flip Position: *************-------------**-*---*-----

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1025-5

Parameter: CentroidFold: McCaskill Turner 2^2

Structure String: ........(...)(((((..(((((...))))).)))))

Flip Position: ***********---------------**-----------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1025-6

Parameter: CentroidFold: McCaskill Turner 2^5

Structure String: (((..((((...))))((..(((((...))))).)))))

Flip Position: *****----*------------**-**-**------***

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure