RNAapt3D

Detail of monad1020

Aptamer Detail

monad ID: monad1020

Length: 40

Target Molecule: HIV-1 Nucleocapsid

Sequence: GGAGACAUCCCUCUUGUUGGUGGUGCCGUGUGGAUGUCUC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad1020-1

Parameter: CentroidFold: CONTRAFold 2^2

Structure String: .(((((((((.....((.......)).....)))))))))

Flip Position: *-*-***--****----***-***--*************-

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1020-2

Parameter: CentroidFold: CONTRAFold 2^5

Structure String: .((((((((((.(..((.......)).).).)))))))))

Flip Position: ***--****-------********---*----****--**

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1020-3

Parameter: CentroidFold: McCaskill Turner 2^2

Structure String: .((((((((((......((((...)))).).)))))))))

Flip Position: *-----**********-----****------******---

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1020-4

Parameter: CentroidFold: McCaskill Turner 2^9

Structure String: .((((((((((....(.((((...)))))).)))))))))

Flip Position: *------------**------***-----***--------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure