RNAapt3D

Detail of monad1011

Aptamer Detail

monad ID: monad1011

Length: 35

Target Molecule: SP6 RNA Polymerase

Sequence: UUGCUUGGAAUGCGUUAUAGUCUCUUAGGUGUGUA

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad1011-1

Parameter: CentroidFold: CONTRAFold 2^4

Structure String: ..((((.((..((......)).))..)))).....

Flip Position: ****--------*-***-*-----***********

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model

Secondary Structure

Structure monad1011-2

Parameter: CentroidFold: CONTRAFold 2^5

Structure String: ..(((((((..((......)).)).))))).....

Flip Position: *-------------**---------------****

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model

Secondary Structure

Structure monad1011-3

Parameter: CentroidFold: McCaskill BL 2^2

Structure String: ..((((....................)))).....

Flip Position: ************************-***-**-***

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model

Secondary Structure

Structure monad1011-4

Parameter: CentroidFold: McCaskill Turner 2^-2

Structure String: ..((((.....((......)).....)))).....

Flip Position: **---******---***----*****----*****

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model

Secondary Structure