RNAapt3D

Detail of monad1004

Aptamer Detail

monad ID: monad1004

Length: 28

Target Molecule: G protein-coupled receptor kinase 2 (P25098)

Sequence: GGCAGACCAUACGGGAGAGAAACUUGCC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad1004-1

Parameter: CentroidFold: CONTRAFold 2^4

Structure String: (((((.((....)).........)))))

Flip Position: --*-**--***---********-----*

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1004-2

Parameter: CentroidFold: CONTRAFold 2^5

Structure String: (((((.((....))..(.....))))))

Flip Position: --------****------****------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1004-3

Parameter: CentroidFold: McCaskill BL 2^2

Structure String: (((((......(....)......)))))

Flip Position: ------***--*****-*****------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1004-4

Parameter: CentroidFold: McCaskill BL 2^4

Structure String: (((((....(.(....).)....)))))

Flip Position: ------------****------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad1004-5

Parameter: CentroidFold: McCaskill BL 2^6

Structure String: (((((....(.(....))(...))))))

Flip Position: -------------***---***------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure