RNAapt3D

Detail of monad0065

Aptamer Detail

monad ID: monad0065

Length: 29

Target Molecule: NF-kappaB (P19838)

Sequence: GAUACUUGAAACUGUAAGGUUGGCGUAUC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad0065-1

Parameter: CentroidFold: McCaskill(BL) 2^2

Structure String: (((((....((((....))))...)))))

Flip Position: -----***-----****-----**-----

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0065-2

Parameter: CentroidFold: McCaskill(BL) 2^4

Structure String: (((((((..((((....)))))).)))))

Flip Position: -------------****------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0065-3

Parameter: CentroidFold: McCaskill(Turner) 2^2

Structure String: (((((.(..((((....)))).).)))))

Flip Position: -------------****------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0065-4

Parameter: CentroidFold: McCaskill(BL) 2^-2

Structure String: .((((......(......).....)))).

Flip Position: *------------****---***-----*

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0065-5

Parameter: CentroidFold: McCaskill(Turner) 2^-3

Structure String: (((((.....(((....)))....)))))

Flip Position: *------------****------------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0065-6

Parameter: CentroidFold: McCaskill(Turner) 2^-4

Structure String: (((((......(......).....)))))

Flip Position: --------***--****----**------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0065-7

Parameter: CentroidFold: McCaskill(Turner) 2^-5

Structure String: .((((...................)))).

Flip Position: *------***************-------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure