RNAapt3D

Detail of monad0057

Aptamer Detail

monad ID: monad0057

Length: 23

Target Molecule: Neomycin B

Sequence: GGACUGGGCGAGAAGUUUAGUCC

Adaptation Disease

Product Name: None

Phase: N/A

Remark: None

Structure monad0057-1

Parameter: CentroidFold: McCaskill(BL) 2^2

Structure String: (((((((((.....)))))))))

Flip Position: ---------*****---------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0057-2

Parameter: CentroidFold: McCaskill(BL) 2^-3

Structure String: .((((((((.....)))))))).

Flip Position: *--------*****---------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0057-3

Parameter: CentroidFold: McCaskill(BL) 2^-5

Structure String: .((((.(((.....))).)))).

Flip Position: *--------*****---------

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure

Structure monad0057-4

Parameter: CentroidFold: CONTRAfold 2^-4

Structure String: .(((...............))).

Flip Position: *---***************---*

Tertiary Structure: Rascal: Model
Na+
Optimized Model
Modified Model
Mg2+
Optimized Model

Secondary Structure